| 引用本文: | 杨子云,蒋婷婷,葛春光,贾晓东,刘清发,王琪,彭兰博,兰菲,齐军.基于蛋白质互作网络的COVID-19对肺动脉高压的影响机制[J].生物信息学,2022,20(3):195-202. |
| YANG Ziyun,JIANG Tingting,GE Chunguang,JIA Xiaodong,LIU Qingfa,WANG Qi,PENG Lanbo,LAN Fei,QI Jun.Mechanism of COVID-19 on pulmonary arterial hypertension based on protein interaction network[J].Chinese Journal of Bioinformatics,2022,20(3):195-202. |
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| 基于蛋白质互作网络的COVID-19对肺动脉高压的影响机制 |
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杨子云1 ,蒋婷婷1 ,葛春光2,贾晓东3 ,刘清发1,王琪1,彭兰博4,兰菲5,齐军1
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(1.聊城市人民医院 呼吸内科,山东 聊城 252000;2.聊城市职业技术学院,山东 聊城 252000;3.聊城市人民医院 转化医学实验室,山东 聊城 252000;4.聊城市人民医院 内分泌科,山东 聊城 252000;5.聊城市人民医院 病案信息科,山东 聊城 252000)
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| 摘要: |
| 通过构建肺动脉高压差异基因和冠状病毒侵入人体后免疫反应相关基因的互作网络,探索COVID-19对肺动脉高压的影响机制。首先通过Meta分析挖掘肺动脉高压相关差异表达基因；其次通过SARS-CoV侵染人体后的基因表达数据,挖掘主要功能通路；最后构建肺动脉高压差异表达基因和冠状病毒主要功能通路基因的互作网络,挖掘网络的显著功能模块。发现肺动脉高压与血管平滑肌细胞、成纤细胞、T/B细胞免疫过程、转录调节因子通路、Toll样信号通路等密切相关,互作网络发现ITGAM、HBB、VCAM1、IL1R2等基因是COVID-19感染肺动脉高压患者的重要调节基因。通过肺动脉高压与冠状病毒感染机体后蛋白质互作网络探索了COVID-19对肺动脉高压的影响机制,为肺动脉高压感染COVID-19的研究及治疗提供了新思路。 |
| 关键词: 肺动脉高压 新型冠状病毒 蛋白质互作网络 基因 通路 |
| DOI：10.12113/202007012 |
| 分类号:R73 |
| 文献标识码:A |
| 基金项目:山东省自然科学基金项目(No.ZR2019QH009). |
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| Mechanism of COVID-19 on pulmonary arterial hypertension based on protein interaction network |
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YANG Ziyun1 , JIANG Tingting1, GE Chunguang2 , JIA Xiaodong3 , LIU Qingfa1 , WANG Qi1 ,PENG Lanbo4, LAN Fei5 , QI Jun1
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(1.Department of Respiratory Medicine, Liaocheng Peoples Hospital, Liaocheng 252000, Shandong, China;2.Liaocheng Vocational and Technical College, Liaocheng 252000,Shandong, China;3.Laboratory of Translational Medicine, Liaocheng Peoples Hospital,Liaocheng 252000, Shandong, China;4.Department of Endocrinology, Liaocheng Peoples Hospital, Liaocheng 252000, Shandong, China;5.Medical Record Information Department, Liaocheng Peoples Hospital, Liaocheng 252000, Shandong, China)
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| Abstract: |
| To explore the mechanism of the effect of COVID-19 on pulmonary arterial hypertension, the interaction network of differential genes of pulmonary arterial hypertension and related genes of immune response after the invasion of coronavirus was constructed. First, the differentially expressed genes related to pulmonary arterial hypertension were investigated by Meta analysis. Then, the main functional pathways were found through the expression data of SARS-CoV infected human. Lastly, the interaction network between the differential expression genes and the main functional pathway genes of coronavirus was constructed, and the significant functional modules of the network were extracted. Results show that pulmonary arterial hypertension was closely related to vascular smooth muscle cells, fibroblasts, immune process of T/B cells, transforming growth factor beta pathway, Toll like signaling pathway, and so on. ITGAM, HBB, VCAM1, IL1R2,and other genes were found to be important regulatory genes in patients with COVID-19 infection. The mechanism of COVID-19 on pulmonary arterial hypertension was explored through protein interaction network, which provided a new way for the research and treatment of pulmonary arterial hypertension with COVID-19. |
| Key words: Pulmonary arterial hypertension SARS-CoV-2 Protein-protein interaction network Gene Pathway |
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