| 引用本文: | 张晓婧,潘伟民,曹兴芹.基于Bioperl实现远程自动获取抗逆基因序列[J].生物信息学,2014,12(3):185-188. |
| ZHANG Xiaojing,PAN Weimin,CAO Xingqin.A BioPerl based remote automatic extraction of NCBI resistance gene sequences[J].Chinese Journal of Bioinformatics,2014,12(3):185-188. |
|
| 摘要: |
| BioPerl对于现今大量的生物数据来说,具有很好的获取和处理能力,并且NCBI提供了可以直接访问它下属的 Entrez 数据库(包括 PubMed)的编程接口 ,即E-Utilities。为了从NCBI中自动获取大量抗逆基因序列,使得生物抗逆基因二次数据库得以搭建,该文基于BioPerl 设计了远程自动获取大量抗逆基因序列的程序。此程序灵巧、精悍, Perl 语言强大的文本处理功能使程序能实现不同类型基因序列的远程获取。 |
| 关键词: BioPerl E-Utilities 远程自动获取 抗逆基因 |
| DOI：10.3969/j.issn.1672-5565.2014.03.06 |
| 分类号:Q343.1 |
| 基金项目:自治区自然科学基金(2010211022);新疆师范大学研究生科技创新基金(20131203)资助。 |
|
| A BioPerl based remote automatic extraction of NCBI resistance gene sequences |
|
ZHANG Xiaojing, PAN Weimin,CAO Xingqin
|
|
(School of Biology, Xinjiang Normal University, Urumchi Xinjiang 830054, China)
|
| Abstract: |
| BioPerl has a good performance to acquire and process large amounts of biological data. NCBI provides BioPerl interface to directly access its subordinate Entrez databases(including PubMed), the E-Utilities. In order to get NCBI gene sequences automatically to build a secondly database for biological stress resistance genes, in this paper, We designed BioPerl based program to extract stress tolerance gene sequence program. This program is smart,lean, and with powerful text processing capability of Perl language,it can achieve different types of remote access to gene sequences for most of the researchers and provide a better way to gain a specific sequence. |
| Key words: BioPerl E-Utilities Remote automatic download Resistance gene |
